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Probing the active fraction of soil microbiomes using BONCAT-FACS
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Sorting for secreted molecule production using a biosensor-in-microdroplet approach
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De novo DNA synthesis using polymerase-nucleotide conjugates
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Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing
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Anoxygenic phototroph of the Chloroflexota uses a type I reaction centre
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Tracking the Origins of Methane-Producing Microbes
… recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … lab had previously collaborated with the JGI on a proposal using this approach through the Emerging Technologies …
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … study, they’ve cracked open the genome of another polar species, the green alga Microglena sp. YARC, which also … across different ocean latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… was done through the JGI Community Science Program . Using an ecology metric called beta diversity, the team … point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the … organisms in these food webs, said Schmidt. Several whale species, including gray whales and humpbacks, migrate to …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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An Addiction Crucial to a Fungus’ Reproduction
… Burkholderia , is recognized as a mutualist, where both species of organism benefit from association, but was … was a likely key to this evolutionary transition. Using this model, researchers also generated the first … at Cornell University and scientists at the Joint Genome Institute, a DOE Office of Science User Facility was …
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