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Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their joint meeting! “Empowering Automated Laboratories: Integrating Experimentation with Data” … in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … various environments, including oceans, lakes, mammalian guts, forests, and soils, ensuring a robust and …
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Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon
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Nitrite Oxidizer Activity and Community Are More Responsive Than Their Abundance to Ammonium-Based Fertilizer in an Agricultural Soil
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Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities
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AraR plays a more dominant role than XlnR in plant biomass conversion in Penicillium subrubescens
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … Microbiology has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … aspects of the project. Sarah:  You all hit a big milestone getting the manuscript describing the atlas published in  …
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Draft genome sequence of Muricoccus roseus DSM 14916T, isolated from a children’s care center in Finland
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From bench to biotech: how a CURE cultivates student self-efficacy, gains in scientific thinking, and career aspirations
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, …
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