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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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Frameshift detection in prokaryotic genomic sequences.
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Draft Genome Sequences of Switchgrass Diazotrophs
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Emiley Eloe-Fadrosh
… Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her postdoctoral training in human microbiome research at the Institute for Genome …
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… imaging. The work was enabled in part by a proposal to the DNA Synthesis CSP call , and the results are described in ACS Chemical Biology. Using fluorescent biosensors to monitor the … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … who nominated species for sequencing and then sent DNA and RNA samples to JGI,” Grigoriev said. All of these …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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