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Multiple sources of aerobic methane production in aquatic ecosystems include bacterial photosynthesis
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Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression
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Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi
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Bacterial and fungal composition and exometabolites control the development and persistence of soil water repellency
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … and even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the … in the areas of metagenomics, single-particle genomics, and metabolic engineering. …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast … This work was funded by the Air Force Office of Scientific Research under Award No. FA9550-14-1-0089, the Camille and Henry Dreyfus Foundation, and the JGI Synthesis Program under FP00005685. In addition, …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. … shotgun sequencing. The team first tested the approach on bacterial laboratory models to set a reference for its performance, and then applied it to environmental samples from the Great Boiling Spring …
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Mapping the Earth’s Hidden Fungal Kingdom
… comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … struggle to identify and classify new species from environmental samples. Meanwhile, even well-studied genomes …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon … plants don’t fully decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat … male plants showed dramatic variation when under those same environmental stressors — with some thriving and others …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in …
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Boosting Small Molecule Production in Super “Soup”
… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make products such as proteins, and the mechanisms for maintenance to keep processes running … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I …
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