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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … CRAGE to rapidly label  E. coli  in order to monitor population dynamics in co-culture. These experiments aim to inform the engineering of stable, synthetic microbial communities to take advantage of their joint metabolisms. …
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Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes
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Multiple Maize Reference Genomes Impact the Identification of Variants by Genome‐Wide Association Study in a Diverse Inbred Panel
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
The work builds upon a pilot project to sequence antimicrobial-producing strains. Established by Handelsman, Tiny Earth aims to crowdsource antimicrobial discovery for the control of plant pathogens, … State University is interested in developing mutant populations of the bioenergy feedstock crop  Camelina sativa …
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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
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Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
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