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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and … on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as … to spread across most of the plant’s ecosystems. The Impact For decades, the liverwort  M. polymorpha has been used as a …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above … Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is … hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … State University (short talk): “Predators of the Deep: virus-host dynamics in the terrestrial subsurface” 2pm …
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Forest Fungi, Seagrass, and a New View of Symbiosis
Three stories of JGI-supported research, connected to nutrient cycles. Francis Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable … and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake east of California’s Yosemite National Park, taken by JGI’s own Jon …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he …
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Critical Assessment of Metagenome Interpretation: the second round of challenges
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Tracing the Evolution of Shiitake Mushrooms
… the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … raphanica, which has been able to adapt to habitats from Alabama to Brazil, suggesting that the same decay-related …
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Progress Reports: 2002–2020
Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome …
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Biodiversity of Magnetotactic Bacteria in the Freshwater Lake Beloe Bordukovskoe, Russia
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for …
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JGI-UC Merced Interns Share Their 2021 Experiences
… 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research … in professional development enrichment activities. For some students in the 2021 cohort, this was their first … … Cataloging Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete …
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