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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways to produce energy, using a process …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal … Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … methanogenesis occurring in the entire archaeal domain of life.” … The U.S. Department of Energy Joint Genome …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new … of computational biologists, bioinformaticians, computer scientists and biostatisticians. Through collaborations with …
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Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi
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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of … Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values , which guide the … trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars …
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also … acceptance and may also be added during the proposal lifecycle based on scientific need. Proposals are considered …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi Otani. Both are members of the JGI’s …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of … July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint …
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