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Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … because they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material … Antonio Camargo present on IMG/VR v4 at the 2022 VEGA meeting below). Another JGI-developed tool, CheckV, assesses …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Nikos Kyrpides
… the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior … al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely … is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and …
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Microbiome Data Science: Understanding Our Microbial Planet
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Graduate Students Get Thesis Research Opportunity at the JGI
… to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in … JGI’s User Programs deputy and head of the Microbial Systems group. Tringe’s research group focuses on the roles … in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … researchers came from two environments: natural forests and plantations managed through human intervention. By …
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