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Natural Prodcast Episode 7: Ben Shen
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JGI at the AGU Fall Meeting
… controls of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm … of Arizona (lightning talk): “Effect of drought on soil microbial metabolisms driving carbon allocation and … measurements of nitrogen dynamics in agricultural soil” 4pm Convention Center, Poster Hall D-F poster …
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Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1T)
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Fungus Fuels Tree Growth
… elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or … of Florida collected forest samples of poplar and soil from Washington and Oregon. The cuttings included … of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results in  Molecular …
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What Happens To a Rainforest When You Dial Up Drought?
… store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of …
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A Community Resource for Secondary Metabolite Researchers
… and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed … Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently underway. … U.S. Department of …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call …
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SIPs with Standards
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Rex Malmstrom
Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. …
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Learning to Look
… search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, … microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much …
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Supercharging SIP in the Fungal Hyphosphere
… microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … allowing them to process dozens of samples simultaneously. Soil microorganisms play a critical role in sequestering … greenhouse gas emissions, and understanding how to improve soil health can help mitigate the effects of climate change. …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for …
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