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Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta(Convolvulaceae)
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Genomes of multicellular algal sisters to land plants illuminate signaling network evolution
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The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
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Holo‐omics disentangle drought response and biotic interactions among plant, endophyte and pathogen
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… waters of Antarctica, tiny ocean-dwellers called phytoplankton play an outsize role in cycling carbon and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab) through the JGI Community Science Program (CSP) .  Through this …
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Pan genome of the phytoplankton Emiliania underpins its global distribution
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … life. By leveraging massive user-generated datasets at the JGI and other publicly available data, GenomeOcean employs … And since microbial genomes are simpler to model than large plant or animal genomes, they are a good starting point to …
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Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
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