Search

… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … they are, a recent data set  outlined in  Scientific Data connects molecular features to large ecosystem-level … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of microbes …

Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with … groups joined the project to contribute to the data for six new species. I must mention that some of the members from …

… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE … luminescens and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly …

… their JGI mentors, what challenges they overcame, and what new skill sets they look forward to taking back to school.  … Edward Lu and mentor Miguel Romero Sean Saki and mentors  Zhong Wang and Bryce Foster Sivagunalan Thamilarasan and mentors Zhong Wang and Bryce Foster Feng Yu and mentors Zhong Wang and …

… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and deliverables as well as target cycle …

Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … research mission.     Director's Perspective     Honors & Awards …

… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … resist. The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact …

To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. … as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …

Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead at … (2020-2022) UCLA Molecular Biology Institute Postdoctoral Award for Research Excellence … Education … Selected …

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of …