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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … in proteins that low sequence identity may belie. The technology he’s using is magical; transform any length of …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… In this short video, UC Merced undergraduate and graduate … internship experiences have influenced their careers in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began … viridis ). The team of researchers at the Danforth Plant Science Center (Danforth Center), HudsonAlpha and the JGI …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global … by the plant team at the  HudsonAlpha Institute for Biotechnology . An updated reference genome for  T. cacao has … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … published in  The Proceedings of the National Academy of Sciences bridges this gap, by tracing the evolution of a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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MGM Workshop at Fisabio Summer School 2026
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning and sharing concepts, tools and … Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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