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Mukhopadhyay and Steve Singer are harnessing the versatile bacterium Pseudomonas putida to break down biomass and … a more sustainable, biobased economy. They conduct research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …

Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics … of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence …

And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

… the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up … and biostatisticians. Through collaborations with internal and external scientists, the Wang group has …

Back in 2011, JGI-supported researchers published a paper in the journal … metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …

… from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … PR1603/2-1). The authors acknowledge sampling logistics provided by the University of Regensburg, i.e., by Harald Huber …

Researchers at the JGI develop a tool to quickly and accurately identify … (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., DEAC05-76RL01830 to P.N.N.L.), and used …

Populations of Antarctic lake microbial communities change with … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … of light and salinity in this portion of the lake provides everything the bacteria needs to survive. In December, …

RIViT-seq technology could speed up associating transcription factors with their target genes. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …

The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with each other in a public forum. Second, SMC provides an opportunity for users to publicly engage with each …

… metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell … and their genomes then amplified and sequenced individually, offering scientists the opportunity to apply … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …