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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… then allowed the team to ask, for the 34 hosts they found, how prevalent in the mat are their viruses? The abundance of …
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Triggering Morel Fruiting
… a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are acquired … carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into … polysaccharides such as starch and cellulose were rapidly degraded by a set of significantly upregulated glycoside …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was formerly at … of the InterMine data warehouse, is still available in v13. However, the genomes included in PhytoMine will typically …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … of biological systems. The JGI strategic plan lays out how users and the global research community will bridge … user facility also located at Berkeley Lab, to understand how biomaterials are made and improve them. Biosurveillance …
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Alabama A&M Interns Access An Abundance of Knowledge
… Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant microbiome. They also took part in many enriching … CRISPR Cas9 knockout mutants to observe and investigate how transporter proteins regulate the production of root …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… of Rutgers University is interested in understanding how unicellular red algae (Cyanidiophyceae) have adapted … to crowdsource antimicrobial discovery for the control of plant pathogens, partnering with 600 instructors worldwide … are important for poplar plant health, in part to learn how these species can modulate their behavior in the …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking down potential biomass sources in ways we are only just beginning to …
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An Addiction Crucial to a Fungus’ Reproduction
… its reproductive machinery The Science To better understand how beneficial organisms (symbionts) are transmitted between … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and … Office of Science User Facility was conducted to understand how the antagonistic-to-mutualistic transition occurs. …
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Crysten Blaby-Haas
… to include in vitro protein-based techniques, algae, and plants, while focusing on understanding the evolution and … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus … Stübe R, Argüello JM and Merchant SS. (2014) Evolution of a plant- specific copper chaperone family for chloroplast …
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Better Genome Editing for Bioenergy
… before felling their research problem: at a genetic level, how does  Y. lipolytica work? The project was a … tantalizing microbial factory, capable of turning abundant biomass carbohydrates — glucose and xylose — into fatty … CRISPR-Cas9 in order to interrogate each one’s function. However, the team first needed to fix a defect in the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most … ZW rather than ZZ encodes for females. To better understand how sex determination works in shrub willow, researchers … response regulator that was expanded in a palindrome and shown to be undergoing gene conversion in willow. This gene …
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Webinar: MycoCosm Tutorial
… only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are built … annotation process (are these functional annotations) and how are these integrated within the platform? A: Please …
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