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… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … bioproducts. Summary Researchers at the University of California, Davis and UC Santa Barbara generated a list of …

… work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his … as a computational biologist. My primary future goal is to form a startup.” …

Lab) were on the scene collecting samples. Terry Hazen, a former Berkeley Lab environmental biologist and current … & Environment Meeting: “What we wanted to do was apply a systems biology approach to the oil spill, looking at exactly what happens at all levels and developing models for cellular properties, communities and ecosystems.” …

Across four forests, researchers have leveraged data from the 1000 … to support a forest, and species vary across Earth’s ecosystems.  Recently, in work  published in  New Phytologist , … different locations. They sampled soils in four forest ecosystems, extracted RNA to understand gene expression, and …

… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish … (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome …

The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … learn more about what microbes are present in any given ecosystem—particularly those that are in low abundances—and … The team first tested the approach on bacterial laboratory models to set a reference for its performance, and then …

… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… of analytical tools and user interface components for the IMG family of systems. …

… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that … enzymes. They found many enzymes that outperformed industry standards.  A year later, her team used …

Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …