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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … called methanogenesis. Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … section as “those that rank in the top 1% by citations for papers published and cited between 2008-2018.” Less than … and Asaf Salamov were part of a team that presented the first large analysis of an Aspergillus fungal subgroup, …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… to human health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence … was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Effects of Polar Light Cycle on Microbial Food Web
… availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this polar … occupy more space on Earth than any other ecosystem. Therefore, understanding the microbial activity that dominates … years ago and has been well-studied by many researchers for nearly five decades. In these frigid systems, where …
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Crysten Blaby-Haas
… joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … Services Honoree, 2022 Peter-Boyer Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for Science, 2020 NIH NRSA Postdoctoral Fellowship (F32), …
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Doubling Down on Known Protein Families
… than 26,000 microbiome datasets, all accessible through the publicly available  Integrated Microbial Genomes & … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … run in such highly parallel infrastructures.”  This is the first time protein structures have been used to help …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … display. The search tool Roux and his colleagues developed first worked on a reference dataset that included genome … and also those associated with humans.” The work also used resources of the  National Energy Research Scientific …
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What Happens Underground Influences Global Nutrient Cycles
… projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy … Research (BER) to harness the combined expertise and resources of two of the national user facilities stewarded … can combine EMSL’s unique imaging, omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically requires ~ … high-molecular weight DNA) is an important factor as well for PacBio metagenomes. Q: How many PacBio metagenomes can I …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … the dynamics of this molecule, researchers developed the first chemiluminescent biosensors for measuring cyclic di-GMP in bacteria through work enabled …
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JGI@25: Strengthening Soybean
… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … to compete with gasoline. Yet.  In 2010, soybean became the first legume species with a published complete draft genome … up with him recently. “So, there’s going to be a need for these biofuels and that’s a good niche market for …
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