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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … development of GenomeOcean supports the DOE Biological and Environmental Research program’s efforts to build predictive … three terabase-scale (Tb) coassemblies that explore diverse environmental microbiomes. Together, these datasets …
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Viruses Reprogram Cells into Different Virocells
… Berkeley National Laboratory (Berkeley Lab), and the  Environmental Molecular Science Laboratory (EMSL), a DOE … facilities stewarded by the DOE’s Office of Biological and Environmental Research in one proposed research project. For … used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences Laboratory, which are DOE …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of …
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Silver age of GOLD introduces new features
… manually curated metadata resources for organisms and environmental samples. The database aggregates relevant … GOLD applies its hallmark  standardized naming for all the environmental samples and is the only resource in the world with nearly 200,000 curated environmental samples with canonical names.  Since its 1997 …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers … shotgun metagenomics approach to learning more about environmental samples starts with researchers first … for more easily identifying cells of interest in a complex environmental sample and then sorting these cells so that …
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Green Algae Reveal One mRNA Encodes Many Proteins
… of Science User Facility located at Berkeley Lab and the Environmental Molecular Sciences Laboratory (EMSL), a DOE … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to enable great science that will help solve energy and environmental challenges. Oh, the magical world of the cow … by analyzing and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial … contigs — into genes and even into genomes — from these environmental samples,” said Matthias Hess, first author on …
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Frederik Schulz
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics …
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Emiley Eloe-Fadrosh
… thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… by capturing genomes of uncultivated giant viruses from environmental sequences across the globe, then using these … in general, or on host populations impacted by adverse environmental conditions. Function prediction on the 2,000 … complete, or partial giant virus genomes reconstructed from environmental sequences is still challenging and even with …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to enable great science that will help solve energy and environmental challenges.   Scanning the California oak … potato famine.   Shortly before the emergence of the SOD environmental crisis, Matteo Garbelotto joined the faculty …
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2023 Progress Report
… research community in studies of complex biological and environmental systems. We optimize our service to the …
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