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Uncovering Novel Genomes from Earth’s Microbiomes
… just a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under laboratory … is key to understanding the roles of microorganisms in regulating nutrient cycles, as well as gaining insights into … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI Announces 2025 New Investigator Portfolio
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Back to the Future! A Sorghum Story
… some sorghum varieties, grown on marginal land with little water, which were developed specifically to turn their …
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John Vogel
… to pathogens. Dr. Vogel’s current research is focused on developing plant functional genomic resources (e.g. … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from … Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… of white. To researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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The JGI Data Portal: Improving User Experience
… data, the team noticed that a large percentage of Phytozome users who were seeking to download all the data associated … this task. Improving the download process for this group of users offered the promise of an immediate benefit. The Data … to more broadly represent JGI’s data. It includes several user-validated features and updated functionality, such as: …
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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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A Plant Root Atlas for Tracking Developmental Trajectories
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Career Research Program (ECRP) award, which is also focused on single-cell and spatial transcriptomics … by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out …
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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… as drivers of methane production, nutrient cycling, greenhouse gas emissions, and water recycling.” Tringe is the interim director of Berkeley … Genomics and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems …
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