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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … Science  376,1453-1458 Nuccio et al 2022 . HT-SIP: a semi-automated stable isotope probing pipeline identifies … 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… metabolites and associated genes are great resources for bioremediation, new agricultural applications or … Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 species … Monell Foundation. … Ceratopteris richardii on Phytozome Data portal … Datasets …
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Antonio Camargo
… research is focusing on the development of new methods for the identification and classification of Mobile Genetic Elements from metagenomic data.  Antonio's GitHub …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
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Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the …
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JGI@25: From Life at the Extremes to Editing Genomes
Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … a Nobel Prize in Chemistry to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the …
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JGI User Executive Committee Expands
Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the University of Oslo, Aaron … more plant proposals and provide feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist … or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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