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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a recent article … complex biological systems for energy and other applications. All annotations, comparative tools, and …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse … version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used resources of …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the French National Institute for Agricultural Research …
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The JGI Data Portal: Improving User Experience
… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 years, the … as a public good available to all users for any application while also encouraging data users to cite the …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Otani H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional machineries. Nat …
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Chomping Toward Better Plastic Recycling
… We know all kinds of things about plastic – except, how to break it down for …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … You can learn more about how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the … collaboration with industrial partners, generated hundreds of transgenic switchgrass lines in an effort to create …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … demand, and costs of current offerings in the JGI product catalog. As a result certain products have been  … detection, population analysis Text file of SNPs (incl location in genome, coding/vs non, syn vs non-syn aa change …
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A Plantiful Future: Xiaohan Yang
… using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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