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CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … more and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …

… demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) … sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …

… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …

Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … or early November, at which time they will receive certificates. With Olmstead and Lawrence back on campus, Visel …

… may not seem to amount to much, the common bean (Phaseolus vulgaris) is actually a vital source of protein in many … a 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering time, … trait. Traditionally beans have had a shelf-life about roughly 6-9 months before their color begins to …

… the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two … postdoc Jarrod Chapman, developed a method to correctly identify polyploid subgenomes without needing to know the … an early algorithm and developing it in order to talk about the subgenome identity.”  These days, Session is …

… with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … namely the 16S ribosomal RNA (rRNA) gene, to mark or identify microbial species. All SAR324 have very closely related …

… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce … Lab is really gearing towards getting us to zero waste certification. That says you’re diverting waste appropriately …

… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too … ecosystems function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 …

… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … in its progeny. The study’s transcriptomic data also identified many genes potentially important for the symbiosis, …

… first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then …

… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … sugar and biomass. Additionally, the team was able to identify a major locus (Bru1) that durable resistance to brown …