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Ian Blaby
… biology and functional genomics. Prior to joining the JGI, he was a group lead at Brookhaven National Laboratory … and post-doctoral positions at University of Florida and UCLA he has worked with a wide range of eukaryotic algae, … platform at the Joint Genome Institute for DNA construct design and assembly—present and future challenges. …
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Busting the Unbreakable Lignin
… the remaining components into  biofuels and bioproducts. If anaerobic fungi could be used to effectively modify … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … called metagenome binning, we were able to reconstruct thousands of metagenome-assembled genomes (MAGs) … are now available in a  public Narrative , which provides shareable, reproducible workflows. “Metabolic modeling is a …
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Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to their environments, two gene families—peroxidases and nucleotide-binding leucine-rich repeats (NLRs) —stood out for …
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