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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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JGI on the 2020 Highly Cited Researchers List
… that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples … than 200 scientists and sequenced by the JGI through the  Community Science Program, and already available on the …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … if the gene is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to …
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Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract
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DAP-seq Drives Robust Mapping of Gene Regulation
… applications. “We worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in … species; stricter filtering criteria provides a robust community dataset of improved quality; deep insights …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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JGI announces 2024 New Investigator portfolio
… our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned … proposals — through the New Investigator call under our Community Science Program . Below find a list of researchers … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean …
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
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Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring
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Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities
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