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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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Rewiring metabolism of Clostridium thermocellum for consolidated bioprocessing of lignocellulosic biomass poplar to produce short-chain esters
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying …
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SpaRC: scalable sequence clustering using Apache Spark
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Improving genome assemblies by sequencing PCR products with PacBio
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Complete Genome Sequence of Francisella philomiragia ATCC 25017
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Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
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