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Len Pennacchio
… landscape of gene regulatory sequences in the human genome. Understanding how variation in regulatory sequences …
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2024 Progress Report
… research community in studies of complex biological and environmental systems. We optimize our service to the … genomic innovation to provide the foundational biological understanding that opens up new ways to harness biology. This new plan positions JGI at the forefront of environmental genomics and sets forth a five-year set of …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Partnerships: Adopt-A-Genome
… genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other metadata to enable comprehensive …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to enable great science that will help solve energy and environmental challenges. Oh, the magical world of the cow … However, less than 10% of the microbes found in any environment can be grown in a laboratory — and rumen … by analyzing and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial …
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High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals
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Viral niche-partitioning: Comparative genomics of giant viruses across environmental gradients in a High Arctic freshwater-saltwater lake
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The Power of One, Amplified
… for  extracting snippets of microbial genomes directly from environmental sequence data, by piecing each genome together … approach to this is single cell genomics, where cells from environmental samples are first separated, and their genomes … to closely related cells plucked directly from the environment. Summary Dewar Creek is a remote hot spring, …
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