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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process …
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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National … Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online … vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … lead to sustainable pathways for making high-value bioproducts including biofuels. In addition, the team says that … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. …
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Help from Citrus’ Bitter, Hardier Cousin
… never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … . … View the Trifoliate Orange Genome on the Phytozome Portal … Trifoliate Orange Genome …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with … plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … which then can be explored in depth for multiple models and their close relatives across the fungal tree of life, …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … into many products; giving scientists a bigger bang for their buck. The research team reports that transferring just …
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Tracking the Origins of Methane-Producing Microbes
Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … global carbon cycle, and are of significant interest for their potential contributions to a sustainable bioeconomy, …
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Virus-Microbe Interactions of Mud Island Mangroves
University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate … awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national …
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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