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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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A Model System for Perennial Grasses
… near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and … For example, offspring of a cross between the hallii (HAL2) and filipes (FIL2) varieties were subjected to a monthlong drought, and then … of the US Department of Energy under contract no. DE-AC02-05CH11231. The UT Brackenridge Field Lab and the Ladybird …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass … (JGI), a DOE Office of Science User Facility, has discovered that the candidate bioenergy feedstock switchgrass … complete genetic makeup) and 10 common gardens. We discovered that 8X populations have arisen multiple times from …
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Scaling Up Existing Skill Sets
… to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in Quantitative and Systems … the Biophysics program. (Graduated from UC Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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Mapping Heat Resistance in Yeasts
… closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the challenges in understanding … annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team led by researchers at the … of the US Department of Energy under contract no. DE-AC02-05CH11231. The work was supported by R01 GM120430-A1. …
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JGI Scientists Pen Genome Watch Articles
… Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … led to the work published in Scientific Reports . Before 2006, Olpidium was one of the many obscure fungi of … of rapid development of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data …
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Natural Prodcast Episode 4: Nancy Keller
… we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and … (SIMB) Natural Products meeting in San Diego in January 2020. You can find the podcast on Apple , Google , Spotify , …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … There, standing at a safe distance, with proper face covering, was JGI’s Administrative Services Group lead …
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SPRUCE-ing Up Science
… When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc … Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: 10.1111/nph.18072.   Byline: …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements …
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