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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … of discovering and modelling complex biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the whole cell are actually contained within a structure that has a membrane,” Volland said. “And this is very …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . …
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Virus-Microbe Interactions of Mud Island Mangroves
… will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … program , which awards graduate students the opportunity to pursue part of their thesis research at one of the DOE …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a … ) “Most people study actinomycetes because they produce a very wide variety of chemical compounds as secondary …
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How Microbes Can Protect Plants in Drier Straits
… at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to help make plants more …
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DAP-seq Drives Robust Mapping of Gene Regulation
… regulation determines when and where genes are activated to sustain life’s processes.  Traditionally, mapping this … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … “switches” within multiple complex genomes. The end product is an expansive, multi-species dataset enabled by …
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Tracing the Evolution of Shiitake Mushrooms
… fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the global  … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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When “The Blob” Made It Hotter Under the Water
… marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake … that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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