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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to crowdsource antimicrobial discovery for the control of plant pathogens, partnering with 600 instructors worldwide … which species of mycorrhizal fungi are important for poplar plant health, in part to learn how these species can … their  genome sequences to improve breeding by genetic improvements. Apomixis is asexual reproduction through …
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The evolution of sperm and non‐sperm producing organs in male Drosophila
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… organisms may evolve.  Determining the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two copies, a condition known as polyploidy. The multiple … copies arise from past genome duplication, which occurs in two basic ways. In “autopolyploids”, genome duplication …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … Ralstonia with enzymes that make phosphate bioavailable for plants. When these engineered bacteria were used with the … DNA insertion, the new system, CRAGE-Duet, can accommodate two DNA constructs, doubling the amount of DNA that can be …
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THE Bioenergy Tree
… trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from …
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Training the Next Generation of Talent
Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole … Science Program collaborators, and UC Merced has many talented graduate students working in genomics and … QSB Graduate Program Chair Ardell . He also noted that the two inaugural JGI-UC Merced Summer Internship Program alumni …
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JGI Scientists Pen Genome Watch Articles
… latest article, published January 27, is about engineering plants and their microbiomes for more sustainable … genomics from around the globe through a collaborative network of researchers that we support through our role as a … with  Nature ’s cartoonists, the article comes out — about two months after the first draft. Woyke has so far selected …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by altering their growth program, and on how plants coordinate their gene expression with light and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations with the JGI began soon … DOE Bioenergy Research Centers (BRCs) have expanded the network of common gardens and are exploring improvements to switchgrass through more targeted genome …
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Ian Blaby
… approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., … Exploiting algal NADPH oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. … responses and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… switchgrass is polyploid. This means it contains more than two copies of the genome , which can have pronounced … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common gardens. We …
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