Results

Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Forming Scientific Connections and Building Community
… “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Four Researchers Join JGI User Executive Committee
… development and initiation of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a UEC member, he …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… students summer research experience at the JGI. On July 26, 2018, the JGI celebrated the culmination of the fifth … saying, “I wish Akshay could stay at the JGI for another 6 months! In a very short time his incisive questions, … and hard work have carried it through the difficult early stages, so I can begin biological analysis of the data sooner …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … with the JGI. Working together, they found most bacterial genomes from water and soil communities were at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators … proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data …
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