Results

Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of … comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Forming Scientific Connections and Building Community
… “ Exploring the epigenetic basis of pathogenicity in bacteria” Erika Maquiling : “Being a JGI intern means going …
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Four Researchers Join JGI User Executive Committee
… Köpke of Lanzatech are the latest additions to the now 14-member committee. Go here to view the current UEC roster. … development and initiation of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a UEC member, he …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel … and hard work have carried it through the difficult early stages, so I can begin biological analysis of the data sooner … and Blood Institute in August 2018 Travis Lawrence (2014 graduate intern): Accepted a post-doctoral position with …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … with the JGI. Working together, they found most bacterial genomes from water and soil communities were at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and transcriptome … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … to re-visit the Olpidium genome data . Taking the advantage of rapid development of binning methods, we were able …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on investigating the … proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze … in sequencing secondary metabolite-producing environmental bacteria from the Tiny Earth collection. The work builds …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data …
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