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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell sorting (FACS) to sort …
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Dispatches From JGI Interns
… interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread … to pathogens. Dr. Vogel’s current research is focused on developing plant functional genomic resources (e.g. …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Simple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli Chromosome
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … of years evolving tactics against potential threats. “Because plants can’t run away, they’ve evolved these really …
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A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism
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