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JGI@25: From Life at the Extremes to Editing Genomes
… of miniature CRISPR-associated proteins that can target single-stranded DNA. Such proteins have been adapted for … studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron Mountain, CA. … scoutRNA Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: …
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Expanding Virophage Diversity
… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage …
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Busting the Unbreakable Lignin
… tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively called … wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than … is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for …
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Alabama A&M Interns Access An Abundance of Knowledge
Alabama A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna … is the area surrounding the roots of a plant in the soil. And I’m specifically working with a grass plant that’s …
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Eelgrass Proves to Be Much Younger Than We Thought
… changes in protein sequences, while others analyzed single point mutations across the genome or changes to the …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get …
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A Powerful Technique to Study Microbes, Now Easier
… help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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Community Science Program
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Green Algae Reveal One mRNA Encodes Many Proteins
… eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… a Genome Insider podcast minisode. To date it is the single largest effort to provide a cataloged and curated … provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that …
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Learning to Look
… inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection … are stealth agents that can enter and exit through the cell membrane without lysing the bacterial host. They can … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, …
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