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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … that completely depends on the context and oftentimes a single molecule can be what I like to call …
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Doubling Down on Known Protein Families
… only able to clearly identify what falls within that single beam. When it comes to microbial communities, … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … specific environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something …
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Tracing the Evolution of Shiitake Mushrooms
… 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks … decomposers that can break down all of wood’s components — cellulose, hemicellulose, and the toughest molecule, lignin. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of … Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to understanding its …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate … For further details, please reach out to the Group Lead …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines …
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Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … key roles in regulating global nutrient cycles. The information gained from understanding the interactions between … of the data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of viral ecogenomics. For this role, Dr. Roux can rely on more than 10 …
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Access to Rock Star Scientists
… Through the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo … UC Merced JGI Mentors : Tanja Woyke & Jessica Jarett, Single Cells Group “My experience at JGI has exposed me to the …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … newest 5-Year Strategic Plan: Beyond Basepairs — A Vision for Integrative and Collaborative Genome Science , the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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