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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … poses significant challenges, as establishing standardized growth protocols demands time, and subjecting them to …
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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to …
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Amplification and adaptation of centromeric repeats in polyploid switchgrass species
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Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
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Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium
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Adaptation strategies of giant viruses to low-temperature marine ecosystems
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The genome of Tetranychus urticae reveals herbivorous pest adaptations
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … accessions, and to confirm phenotypes, which validate traits.”  “The number of lines sequenced is not trivial, and …
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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. …
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Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities
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