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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Identification of over ten thousand candidate structured RNAs in viruses and phages
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Olpidium, The Key to the Origin of Terrestrial Fungi
… was from agricultural research. Several species of Olpidium are obligate endoparasites of some common crops, such as … much damage to the hosts, but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, … new insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … of sustainable biofuels and bioproducts. Filamentous fungi are also being used in the biotechnology industry to produce … More importantly, when faced with a veritable buffet of carbon sources, these fungi detect which complex chains are …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in … New Orleans and online. Register for the meeting here. Here are some sessions of interest (all times in PST unless … controls of nitrous oxide pulses in rewetted forest soils: An integrated -omic and isotopic approach” 12:39pm …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … from the University of Wisconsin. I wanted to say that you are the first person we’ve had on to talk about fungal … know, in bacterial investigations. You’ve spent your whole career as far as I’m aware working on specifically fungal …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in cell-free environments? … CRISPR-Cas9 that enhanced their ability to redirect the carbon in the cells toward particular pathways. In this … huge advantages of the cell-free system is that the cells are no longer growing,” Rasor said. “So they can push more …
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