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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have … that showcase our collaborations and capabilities to enable great science that will help solve energy and … by the side of the road become a key player in biomass-based fuels.   … P. virgatum on Phytozome … Plant Dataset …
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Arianna Krinos
… and genetic diversity on physiology and ecosystem functioning through a combination of transcriptomic, metatranscriptomic, and metagenomic approaches. …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his focus was … of Cell Identity as an R package … Education … Selected Publications … Software …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … mechanisms of sex determination could also lead to new approaches to accelerate flowering, which can speed the pace …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. … even in massive datasets. geNomad employs two distinct approaches to identify both viruses and plasmids; one is …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … DNA is manually separated into a few different groups based on its density — DNA containing isotopes is “heavier” …
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