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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it comes to breaking … helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole‐genome sequence assemblies
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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this … a cluster called Dori is also capable of running smaller assemblies — so we head there for a sense of what this …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … to stabilizing streambanks, wildlife habitats and water-quality regulation. Focusing on the rhizosphere and … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office …
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User Support Analysis Group
… User Support Analysis group provides computational analysis for new technology development and JGI user science … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship program between … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills and collaborating with …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their … Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont …
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The fungus that made itself at home
… plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the … of Oslo scientists and including researchers at the Joint Genome Institute, a DOE Office of Science User Facility, … head-to-head, or confrontation experiments, involving these three Serpula fungi against three other brown rot fungi to …
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