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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region … by allowing the generation of preliminary data for a larger study.” …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … nitrogen, a key ecosystem nutrient. The Impact This study is the first to dig into a forest floor ecosystem to … are abundant, and to which microbes they belong. This study provides further insights into the microbial …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… 5,000 times bigger than most bacteria. To put it into context, it would be like a human encountering another human … at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing to identify … continue research on the project. At the JGI, Volland began studying Ca. T. magnifica in Tanja Woyke’s Single Cells …
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Webinar: MycoCosm Tutorial
… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept oomycetes to be proposed for genome … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Webinar: PhycoCosm Tutorial
… about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic resonance) data, …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence … I will spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of …
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Waiting to Respire
… to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce … as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …
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Supporting Global Research into Actinomycetes
… word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … a public platform built on the knowledge of researchers studying actinomycetes and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially Streptomyces and many other …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile for a not very well studied …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … Emerald Nash : What I’m working on here is an experimental study of root colonization by resident phages of a plant …
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