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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The Science In 1999, … its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. … Program , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, … built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows researchers to study how …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … choose the genome you’re after as the dataset. From the (new and improved JGI Data Portal).  Go to  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI announces 2025 Functional Genomics awardees
… Kathleen Scott, Tiffany Taylor, Setsuko Wakao and Benjamin Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who translate genomic … network mapping, developing microbial systems to convert renewable feedstocks into advanced biofuels and chemicals, and …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … “When I originally envisioned the project of the class, I knew that I wanted them to write a final paper that  could be …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … transformations.” The JGI’s large-scale call included algal genomics as a focus area, and one of the accepted proposals …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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JGI Announces 2026 Functional Genomics Recipients
… Pictured from left: [Above] Hanin Alzubaidy, Markus Covert, Sheel C. Dodani, Kathryn Fixen, … Joint Genome Institute (JGI) accepts proposals for state-of-the-art functional genomics research from scientists who translate genomic …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … workshops, data carpentry hackathons, and also made new friends while working on their summer projects. Watch … biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having …
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Genome-Based Taxonomic Classification of the Phylum Actinobacteria
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