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How to Target a Microbial Needle within a Community Haystack
… allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … Testing the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a … for less than one percent of the sequences from a bulk metagenome, to just over 50 percent of the targeted …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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A Powerful Technique to Study Microbes, Now Easier
… help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this …
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JGI Accepts 17 Proposals for Community Science Program
… interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and … sequence for Eucalyptus grandis. Accessing recently burned soils in California and Colorado, Mike Wilkins of Colorado … State University and colleagues aim to understand how soil microbiomes in fire-adapted ecosystems respond to low …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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