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SIPs with Standards
Stable Isotope Probing (SIP) is a powerful technique for studying … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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A Social Science Experience
… 2017 Summer Interns Share Highlights of their time at the JGI …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGI-USCCN Strain Sequencing Opportunity
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Hiroshi Otani
… facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … systematic identification of regulons of transcriptional machineries. Nat Commun. 2022 Jun 17;13(1):3502. Udwary …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Biosciences Area Entrepreneurship Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic … with local industry leaders: Arvind Gupta , Managing Director and Founder, Indie Bio John Cumbers , CEO and Founder, … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Assembling a genome has been compared to putting together a puzzle without necessarily knowing the final image. …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the … this evolutionary focus, his work on plant genomics is targeted towards the development of improved biofuel feedstocks …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors who … the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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