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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … Watson and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant …
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Accelerating Metagenomics Discoveries with Deep Learning
… “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for example, a … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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A Complex Confection Decoded: Sugarcane Reference Genome
The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … Force Office of Scientific Research under Award No. FA9550-14-1-0089, the Camille and Henry Dreyfus Foundation, and the …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … Arabidopsis microbiome, particularly, how bacteria can be driven toward compounds produced by the plant roots. He is …
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Dan Rokhsar
… over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. … of plants to changing environments. … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  … The U.S. Department of Energy Joint Genome …
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