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Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.
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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth
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Calculating the Costs of Multiple Switchgrass Gene Copies
… by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … to harbor less genetic and phenotypic (visible traits) diversity. After our team finished analyzing the diversity present in 4X switchgrass, we were surprised by …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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The Power of One, Amplified
… by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. Their work showed that … Lab), employed single-cell sequencing to assess the diversity within and between microbial populations. The work … is commonly used to assess fluctuations in microbial diversity across thousands of samples. Metagenomics is …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in … National Laboratory (Berkeley Lab) uncovered a broad diversity of large and giant viruses that belong to the … large DNA viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the …
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Four Researchers Join JGI User Executive Committee
… professor at Michigan State University. He studies fungal biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He has worked closely with both the Fungal …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Enlarging Windows into Understanding Gene Functions
… the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes anymore, but their functional interpretation … fungi.” Using multiDAP-seq, Nagy’s team is comparing five fungal species to answer questions about how they break down …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … mean that the flagellum was retained in some terrestrial fungal lineages for an extended period of time, which would … triggered rapid diversification of the early terrestrial fungal lineages. Our analyses estimate these diversification …
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