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Genetic Transfer in Action: Uncovering DNA Flow in an Extremophilic Microbial Community
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Respiratory processes of early-evolved hyperthermophiles in sulfidic and low-oxygen geothermal microbial communities
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Functional redundancy and metabolic flexibility of microbial communities in two Mid-Atlantic bays
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Metabolic capacity is maintained despite shifts in microbial diversity in estuary sediments
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish the data sets the trees are based upon? A: This is still work in progress as new genomes are being added. We do plan to publish the tree or …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … mitochondrial annotations. Summary Mitochondrial genomes carry the genes responsible for oxidative … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Graduate Students Get Thesis Research Opportunity at the JGI
… of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … to an exceptional caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in … “This outstanding collaborative opportunity with JGI’s experts in computational biology and microbial ecology will …
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10 From JGI on the 2019 Highly Cited Researchers List
… Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … in Nature Biotechnology, the work brought together virus experts, representatives from the Genomic Standards …
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Finding the Fermenters
… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also … the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that …
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