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A most wanted list of conserved microbial protein families with no known domains
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Scaling Up Existing Skill Sets
… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five … my existing skill set to a new scale, which presented a host of interesting and ultimately rewarding challenges. … STEM career, particularly one that incorporates big data. A large part of my project this summer was utilizing a high …
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CSP Functional Genomics
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics … between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in breeding efforts, …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… This NEON-focused webinar complements a  recent webinar co-hosted by the JGI and EMSL inviting researchers to apply for … for Structural Molecular Biology .  Watch this webinar hosted by EMSL to learn more about BioSANS. Letters of … or plan on collecting RNA samples from soil or surfaces for microbe-focused collections? A: Not at the moment but it is …
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Mining Metagenomes for Cas Proteins
… to be unearthed in sequencing and analyzing uncultivated microbes. Summary The CRISPR-Cas system is an immune mechanism in bacteria that confers resistance to foreign genetic elements … Data Science group mined the IMG/M system with its large collection of publicly accessible metagenomic datasets …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak … (NERSC) has another supercomputer, Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is …
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GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring
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JGI Workshop at SIMB NP Meeting
… to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered … regulation of biosynthetic gene clusters (BGCs) in native hosts, the complexity of cloning and expressing a given BGC in various hosts, availability of sequenced genomes, and computing …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to … yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees rely on their gut microbiota … rectum, downstream of the ileum and similar to the human large intestine. Both bacterial clades can metabolize …
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Metabolomics
… variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well …
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