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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 … & Applications (VEGA) Symposium. The work also used resources of the National Energy Research Scientific Computing …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have … reaction using simple inorganic sulfur-containing chemicals instead of light. Boeuf pointed out that, without …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from … metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … can support biological data analysis. It is a free, open source analytics platform provided to the research community … the 500-gigabase cap and that you don’t request outside of the sample range that’s listed. Q: What are the pros and …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population … relationship between plant roots and arbuscular mycorrhizal fungi (AMF), known to provide plants with nutrients and …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the … LBNL Early Career LDRD, 2018 Senior Editor: Microbiology Resource Announcements … Education … Selected Publications … …
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Len Pennacchio
Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Hollaender Distinguished Fellow where he identified a novel apolipoprotein (ApoA5) involved in human and mouse … of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & …
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Events
…  Learn about meetings the JGI is hosting:   … New Lineages of Life (NeLLi) … Viral EcoGenomics & Applications (VEGA)  … …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … as needed: Provide additional requested information or resources to users Coordinate meetings with DOE JGI Science …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: …
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