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CRAGE-RB-PI-seq reveals transcriptional dynamics of plant-associated bacteria during root colonization
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JGI announces 2025 Functional Genomics awardees
… [Above] Hao Chen, Matthew Cope-Arguello, Theophilus Olufemi Isimikalu, Todd H. Oakley, BJ Philmus and Aaron M. Roshotte; [Below] … energy independence and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  …
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Lignin‐modifying processes in the rhizosphere of arid land grasses
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … There he constructed the pipelines for directed finishing and co-led the team that finished the DOE human … novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. …
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Active Site and Laminarin Binding in Glycoside Hydrolase Family 55*
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and … was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal crop for those …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … shows methanogenesis is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By … study how methanogenesis takes place in the context of the genetic material of many different organisms in an …
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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Autophagy restricts symbiosis-associated cell death and regulates colonization by Serendipita indica in Arabidopsis
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Seasonal Dynamics of Core Fungi in the Switchgrass Phyllosphere, and Co-Occurrence with Leaf Bacteria
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