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… assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and Roux, … The work is supported by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his …

… and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …

… techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome evolution in a pan-genomic context. … manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, rapid generation …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … shrubby grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model …

… Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …

… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … statistics across genomes (see video on comparative tools) 5.  Q: Is there any programmatic access to the portal? Or … is still in development and not available for download. 9.  Q: Can I upload my own sequences? A: We can add external …