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Evolution of a Fungal Gene Expression Regulator
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… one of the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover article for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a technique called spatial transcriptomics, to generate maps of gene expression. This spatial transcriptomics …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… one of the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover article for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … a technique called spatial transcriptomics, to generate maps of gene expression. This spatial transcriptomics …
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Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay
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Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
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Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10T)
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Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats
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Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she … the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … microbe. The work is an example of how function-driven genomics, which Woyke and her colleagues define as “any form of …
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